diff --git a/packages/opencode/src/index.ts b/packages/opencode/src/index.ts
index 1fa027abf9..a9dc489126 100644
--- a/packages/opencode/src/index.ts
+++ b/packages/opencode/src/index.ts
@@ -108,7 +108,7 @@ const cli = yargs(args)
       args: process.argv.slice(2),
     })
 
-    const marker = path.join(Global.Path.data, "opencode.db")
+    const marker = path.join(Global.Path.data, "storage", "json-sqlite-migration.done")
     if (!(await Filesystem.exists(marker))) {
       const tty = process.stderr.isTTY
       process.stderr.write("Performing one time database migration, may take a few minutes..." + EOL)
@@ -142,6 +142,7 @@ const cli = yargs(args)
           process.stderr.write(`sqlite-migration:done${EOL}`)
         }
       }
+      await Filesystem.write(marker, `${Date.now()}\n`)
       process.stderr.write("Database migration complete." + EOL)
     }
   })